PubServer collects homologous sequences from NR database and retrieves and filters associated publications.
Enter protein sequence in fasta format with description line
(see examples of server's
input
and
output
)
Search scenarios:
find close similarities
exhaustive search
Psi-blast parameters:
maximum number of iterations:
1
2
3
4
5
6
7
8
9
maximum number of hits:
10
50
100
250
500
1000
5000
10000
20000
maximum e-value:
1e-20
1e-10
1e-5
0.0001
0.001
0.01
0.1
1.0
10.0
Output filtering:
sequence identity to the input sequence at least
0%
5%
10%
15%
20%
25%
30%
35%
40%
45%
50%
55%
60%
65%
70%
75%
80%
85%
90%
95%
100%
show publications referring to no more than
10
50
100
250
500
1000
5000
10000
20000
30000
40000
50000
100000
500000
1000000
proteins
show only proteins with journal publications
Fields to be displayed
authors
title
journal
MeSH terms
Show vocabulary statistics from
titles & abstracts
MeSH terms
exclude common words from top
none
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
all
frequency band(s)
display the top
10
20
30
40
50
60
70
80
90
100
results(s)
